Welcome to PREFFECT's documentation!

Contents:

• _config.py module
• _distributions.py module
  • NegativeBinomial
  • Poisson
  • ZeroInflatedNegativeBinomial
  • log_nb_positive()
  • log_zinb_positive()
• _logger_config.py module
  • setup_loggers()
• _model_py module
  • Decoder
  • Encoder
  • LibDecoder
  • LibEncoder
  • VAE
• preffect_cli.py module
  • read_config_file()
  • str2bool()
• preffect_factory.py module
  • core_only_copy()
  • factory()
  • factory_setup()
  • generate_and_save_visualizations()
  • setup_cuda()
• _preffect.py module
  • Preffect
• _data_loader.py module
  • FFPE_dataset
• Index
• _inference.py module
  • Inference
• _utils.py module
  • To()
  • ZINB_expected_value()
  • adjusted_categorical_correction_variable()
  • calculate_and_sort_by_iqr()
  • categorical_correction_variable()
  • check_folder_access()
  • check_for_nans()
  • check_int_and_uniq()
  • copy_file()
  • ensure_directory()
  • logging_helper()
  • logging_tensor()
  • multi_logging_tensor()
  • one_hot_encode()
  • plot_progression()
  • plot_progression_all()
  • print_loss_table()
  • reparameterize_gaussian()
  • sanity_check_on_configs()
  • selective_one_hot()
  • set_seeds()
  • target_specific_one_hot()
  • torch_mtx_unbatching()
  • umap_draw_latent()
  • update_composite_configs()
• _error.py module
  • PreffectError
• _cluster.py module
  • Cluster
• _ZINBEstimator.py module
  • ZINBEstimator

Indices and tables

• Index

• Module Index

• Search Page